nhanesR stores downloaded and parsed NHANES files in a local cache to avoid
redundant downloads. By default the cache is placed in the standard user
data directory for your operating system (see below). Use this function to
view or change the location for the current session, or set it permanently
in your .Rprofile.
Details
Package options
Three options control nhanesR behavior. Set any of them in your .Rprofile
to make the change permanent across sessions; changes made during a session
(via nhanes_cache_dir() or options() directly) last only until the
session ends.
| Option | Default | Purpose |
nhanesR.cache_dir | file.path(tempdir(), "nhanesR") | Root directory for all cached files |
nhanesR.verbose | TRUE | Print progress messages during downloads |
nhanesR.timeout | 120L | HTTP request timeout in seconds |
Default cache location
By default the cache lives inside R's session-temporary directory
(tempdir()), so nhanesR never writes to your home directory without
your consent. Downloaded files are re-fetched in each new R session. To
keep a persistent cache, set nhanesR.cache_dir in your ~/.Rprofile.
Setting options permanently
Add lines like these to your ~/.Rprofile:
options(
nhanesR.cache_dir = "/data/nhanes_cache", # shared lab server path
nhanesR.verbose = FALSE, # suppress progress messages
nhanesR.timeout = 300L # 5-minute timeout for slow connections
)Options set in .Rprofile take precedence over package defaults: nhanesR
only sets an option at load time if it is not already defined.
See also
nhanes_download() and nhanes_download_analyte(), whose caching
behavior is controlled by the options described above.
Examples
# View current cache location (defaults to a subdirectory of tempdir())
nhanes_cache_dir()
#> [1] "/var/folders/68/vh2f8kzn09j8954r6q9100yh0000gn/T//Rtmp7zLR2U/nhanesR"
# Change to a persistent location for this session only
# \donttest{
nhanes_cache_dir("~/my_nhanes_cache")
#> [1] "/Users/dwinsemius/my_nhanes_cache"
# }
# Suppress download messages for this session
options(nhanesR.verbose = FALSE)
# View all current nhanesR option values
Filter(function(x) startsWith(x, "nhanesR."), names(options()))
#> [1] "nhanesR.cache_dir" "nhanesR.timeout" "nhanesR.verbose"